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You need a Binder design project with write access. Use a public structural example or a target you are authorized to work with.

1. Create a project

From the organization workspace, create a Binder design project. Give it a name that identifies the biological objective.

2. Complete target setup

Add a target using the sequence or structure input offered by the project. Check target identity, chains, copies, and residue numbering. Review the structure and complete each setup step before saving the target. See Create a protein design target.

3. Choose binder inputs

Use a supported Boltz specification or prepare a custom binder specification. Review fixed and designable regions for a custom specification.

4. Create an experiment

Create an experiment with a descriptive name. Add a hypothesis that explains the intended interface and biological effect.

5. Configure and start design

Open a new design screen. Select the target and binder specifications, then configure the run settings offered by the form. Review any cost information and submit when ready.
Configured protein design screen

6. Review candidates

Open the screen overview to check progress and final status. Review candidates when they become available. Compare structures and properties, record triage decisions, and export a shortlist for experimental validation. See Run a protein design screen and Results and Triage.